Model Name: Arabidopsis_clock_extend

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Version Comments

Version 3 is similar to version 2 except for light function, which has parameters "dawn" and "dusk" in version 3

 
Model Format SBML L2 V3
Description

The first version of the model corresponds to the one published in Pokhilko et al Mol Syst Biol 2010, which is also presented on the Mol. Syst. Biol. website and was submitted to the Biomodels database. Note: minor errors in published supplementary information are documented in a file attached to version 1; the published SBML files are correct.

The second version has some names slightly modified for compatibility with the SBSI platform. Both first and second versions have values of  "dawn" fixed to 0 and "dusk" to 12 in the light function.

The third version has parameters "dawn" and "dusk" in equation for light function, which allows to simulate various photoperiods by changing parameter "dusk".

 
Contact/Model Admin Andrew Millar, University of Edinburgh, andrew.millar@ed.ac.uk
Submitted By Alexandra Pokhilko, University Of Edinburgh, sashapokh@gmail.com
Submission Date 2010-05-04 11:20:49.0
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Supplementary Data Files
Model Files original file, simplified file (use simplified if your software cannot read the file, e.g. Sloppy Cell)
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1. Comment by apokhilk on 2010-07-26 18:11:03.0

The model is accepted for publication in Mol. Syst. Biol. 2010: "Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model", A. Pokhilko, S. K. Hodge, K. Stratford, K. Knox, K. D. Edwards, A. W. Thomson, T. Mizuno,  A. J. Millar. The simplified and detailed schemes of the reactions are shown in Supplementary files.